Writ Remedy: Delayed Appeal Permitted on Condition of 25% Pre-Deposit; Rectification Order Doesn’t Reset Limitation

By | November 22, 2025

Writ Remedy: Delayed Appeal Permitted on Condition of 25% Pre-Deposit; Rectification Order Doesn’t Reset Limitation


Issue

Whether a taxpayer can be permitted to file a statutory appeal against an assessment order after the expiry of the limitation period, particularly when the delay was occasioned by pursuing a rectification application that resulted in a partial reduction of dues, and where the admitted tax liability has already been discharged.


Facts

  • Assessment Period: 2021-2022.

  • Original Proceedings: A Show Cause Notice (SCN) in Form GST DRC-01 was issued proposing tax, interest, and penalty. The petitioner failed to reply, leading to an ex-parte order confirming the proposals.

  • Voluntary Payment: The petitioner subsequently made voluntary payments of the admitted tax liability through Form GST DRC-03.

  • Rectification Application: The petitioner filed a rectification application under Section 161.

  • Rectification Order: An order was passed on 14.08.2023, which:

    • Reduced the dues (likely accounting for the payments made).

    • Recorded that the benefit of reduced penalty (under Section 74(5)) was not available because the payment was not made within 30 days of the notice.

    • Noted that interest on the belated admitted tax had not been remitted.

  • The Lapse: The petitioner failed to file a statutory appeal under Section 107 within the prescribed limitation period (3 months + 1 month) from the original/rectification order.

  • Writ Petition: The petitioner approached the High Court seeking permission to file an appeal to contest the remaining liability (primarily penalty), arguing that the tax was paid.


Decision

  • The Madras High Court ruled in favour of the assessee (on the procedural aspect).

  • Scope of Dispute: The Court noted that the substantive dispute was now limited to the liability of penalty for the belated payment of admitted tax, as the primary tax liability had been discharged.

  • Conditional Relief: Acknowledging the petitioner’s right to a fair hearing on the penalty issue, the Court exercised its writ jurisdiction to bypass the statutory limitation bar.

  • Directions:

    • The petitioner was permitted to file a statutory appeal before the Appellate Authority within 30 days.

    • Condition: This permission was subject to the petitioner depositing 25% of the disputed tax amount (penalty/interest) along with the interest component.

    • Mandate to Appellate Authority: Upon compliance with the deposit condition, the Appellate Authority was directed to decide the appeal on merits without referencing the limitation period (i.e., treating the appeal as timely).


Key Takeaways

  • High Court’s Discretion on Limitation: While Section 107 imposes a strict timeline for appeals (which the Appellate Authority cannot extend beyond one month), the High Court under Article 226 can condone longer delays to ensure substantive justice, especially when tax is already paid.

  • Cost of Condonation (25% Pre-Deposit): To balance the equity, High Courts often impose a higher pre-deposit condition (e.g., 25% instead of the statutory 10%) for allowing time-barred appeals.

  • Rectification and Limitation: A rectification order generally merges with the original order only to the extent of the rectification. It does not necessarily grant a fresh full window for appeal on issues not subject to rectification, which is why writ intervention was needed here.

  • Penalty on Belated Payment: The core dispute—whether penalty under Section 74 applies when tax is paid belatedly but before adjudication—remains a matter of merit to be decided by the Appellate Authority.

HIGH COURT OF MADRAS
Tvl. Nagaraj Sellappan
v.
State Tax Officer, Namakkal*
C.Saravanan, J.
W.P. No. 39580 of 2025
W.M.P. Nos. 44464 and 44465 of 2025
OCTOBER  22, 2025
Mrs. R. Hemalatha for the Petitioner. V. Prashanth Kiran, Govt. Adv. for the Respondent.
ORDER
1. Mr.V.Prashanth Kiran, learned Government Advocate takes notice for the Respondent.
2. With the consent of the learned counsel for the Petitioner and learned Government Advocate for the Respondent, this Writ Petition is being disposed of at the time of admission.
3. In this Writ Petition, the Petitioner has challenged the impugned Order dated 20.03.2023 passed by the Respondent for the Tax Period 2021-2022 and impugned Order dated 14.08.2023 whereby the application filed under Section 161 of the respective GST enactments was partially rejected.
4. It is noticed that the Petitioner was issued with a Show Cause Notice dated 15.02.2023 in GST DRC-01, issued under Section 74 of the respective GST enactments.
5. By the aforesaid Show Cause Notice dated 15.02.2023, a sum of Rs.6,61,408/- each was demanded towards SGST and CGST and Rs.1,65,352/-each was demanded as penalty under SGST Act and CGST Act.
6. By the impugned Order dated 20.03.2023, a sum of Rs.30,23,512/- was confirmed as detailed below:-
Sl. No.Tax PeriodTax (In Rs.)Interest (In Rs.)Penalty (In Rs.)Total (In Rs.)
FromTo
1APR 2021APR20216,61,408.001,88,940.006,61,408.00* 15,11,756.00
2APR 2021APR 20216,61,408.001,88,940.006,61,408.00# 15,11,756.00
Total13,22,816.003,77,880.0013,22,816.0030,23,512.00

 

* SGST Rs.15,11,756.00/-
# CGST Rs.15,11,756.00/-
7. The Petitioner thus filed an application for rectification of the said Order dated 20.03.2023. Out of the aforesaid sum of Rs.30,23,512/-, the Petitioner claims to have voluntarily paid a sum of Rs.3,38,310/- (Rs.1,69,155/-x 2) towards SGST and CGST under Section 73(5) of the respective GST enactments by way of Intimation of payment in Form GST DRC-03 dated 07.07.2023.
8. By an Order dated 14.08.2023 (which is also impugned in this Writ Petition), the Respondent reduced the amount payable under Section 74(1) of the respective GST enactments as follows:-
Sl. No.Tax PeriodTax (In Rs.)Interest (In Rs.)Penalty (In Rs.)Total (In Rs.)
FromTo
1APR 2021APR 20212,201.0061,847.001,71,356.00* 2,35,404.00
2APR 2021APR 20212,201.0061,847.001,71,356.00# 2,35,404.00
Total4,402.001,23,694.002,34,712.004,70,808.00

 

* SGST Rs.2,35,404.00/-
# CGST Rs.2,35,404.00/
9. The impugned Order dated 14.08.2023 itself stipulates that as per Section 74(11) of the respective GST enactments, if any person served with an Order passed under Section 74(9) of the respective GST enactments pays the tax along with interest payable thereon under Section 50 of the respective GST enactments and a penalty equivalent to 50% of tax within thirty days of communication of the order, all proceedings in respect of the said notice shall be deemed to be concluded. However, the Petitioner failed to take advantage of the same.
10. Learned counsel for the Petitioner submits that the Petitioner may be given one opportunity to file an appeal against the impugned Order dated 14.08.2023 insofar as the imposition of penalty under Section 74(9) of the respective GST enactments.
11. Learned counsel for the Petitioner however confirms that the Petitioner has not remitted the interest on the belated payment of tax till date.
12. Learned Government Advocate for the Respondent submits that this Writ Petition is devoid of merits as the Petitioner has filed this Writ Petition long after the impugned Orders came to be passed on 20.03.2023 and 14.08.2023.
13. That apart, it is submitted that the Petitioner has admitted to the tax liability and paid the amounts on the dates mentioned above and therefore, there is no scope for interfering with the impugned Order dated 14.08.2023 seeking to reduce penalty under Section 74(11) of the respective GST enactments as the Petitioner has failed to pay interest in time.
14. By way of rejoinder, the learned counsel for the Petitioner submits that the impugned Order dated 20.03.2023 itself was an ex parte Order and therefore the Petitioner may be given one opportunity to explain the case afresh since the Petitioner has discharged the tax liability.
15. Though the Petitioner failed to participate in the proceedings before the Respondent by filing a Reply to the Show Cause Notice in GST DRC-01 dated 15.02.2023, considering the fact that the grievance of the Petitioner has been partly redressed and taking note of the amounts already deposited by the Petitioner on 19.04.2022 and on 07.07.2023, and also the submissions made by the learned counsel for the Petitioner and the learned Government Advocate for the Respondent, the case need not be remitted back to the Respondent at this distant point of time.
16. The only issue that arises for consideration is whether the Petitioner is liable to pay penalty on account of belated payment of admitted tax liability towards SGST and CGST under Section 74(9) of the respective GST enactments.
17. At best, the Petitioner can be given liberty to challenge the impugned Order dated 14.08.2023, though limitation for filing an appeal has already expired considering the fact that the Petitioner has discharged the tax liability on the dates mentioned above.
18. Under these circumstances, liberty is given to the Petitioner to file a statutory appeal before the Appellate Authority within a period of thirty (30) days from the date of receipt of a copy of this order coupled with payment of 25% of the disputed amount of tax together with interest on the belated payment of admitted tax liability.
19. Subject to the Petitioner complying with the above condition and furnishing the proof of the same with the Appellate Authority, the Appellate Authority shall dispose of the appeal on merits after hearing the Petitioner without reference to the aspect of limitation.
20. In case the Petitioner fails to comply with the condition stipulated above, the Authorities under the Act are at liberty to proceed against the Petitioner in accordance with law as if this Writ Petition was dismissed in limine today.
21. This Writ Petition stands disposed of with the above observations. No costs. Connected Writ Miscellaneous Petitions are closed.
Category: GST

About CA Satbir Singh

Chartered Accountant having 12+ years of Experience in Taxation , Finance and GST related matters and can be reached at Email : Taxheal@gmail.com