Interest on Delayed GST Computed from Original GSTR-3B Due Dates to Payment Date.

By | November 14, 2025

Interest on Delayed GST Computed from Original GSTR-3B Due Dates to Payment Date.


Issue

What is the correct methodology for computing interest under Section 50 of the CGST Act on a tax liability (discovered during GSTR-9 filing) that was paid at a later date? Specifically, should the interest be calculated from the original GSTR-3B due dates?


Facts

  • The petitioner challenged an order where a demand was confirmed for four defects, including a tax liability (Defect 1) related to outward supplies for the period 2021-22, which was identified in the GSTR-09.

  • The petitioner had already discharged this principal tax liability via a debit entry on December 19, 2022.

  • A dispute remained over the methodology used by the department to calculate the interest on this delayed payment.

  • The petitioner filed a writ petition seeking a correct computation of the interest.


Decision

  • The High Court remanded the matter back to the respondent (tax authority) to “redo the exercise” and re-calculate the interest for the disputed defects (1 and 3).

  • The court gave a clear direction on the methodology: Interest on the belatedly paid tax must be determined by calculating the delay with reference to the original statutory due dates for the monthly/quarterly GSTR-3B returns (under Section 39) for the periods to which the tax pertained.

  • The interest calculation period runs from those respective GSTR-3B due dates up to the date the tax was actually paid (the debit entry on December 19, 2022).


Key Takeaways

  • Interest Runs from Original Due Date: This ruling confirms a key principle: interest on a tax liability, even if discovered or paid much later, is calculated from the date the tax was originally due, which is the due date of the GSTR-3B return for that period.

  • Payment Date is the End Point: The interest clock stops on the date the tax is actually paid, in this case, the date of the debit entry.

  • Remand for Correct Calculation: When the department applies an incorrect methodology for calculating interest, the court will set aside the calculation and remand the matter with specific directions to re-calculate it correctly, rather than quashing the interest levy entirely.

HIGH COURT OF MADRAS
A.S.R Constructions
v.
State Tax Officer*
C. Saravanan, J.
WP No. 40814 of 2025
W.M.P.Nos. 45736 & 45737 of 2025
OCTOBER  28, 2025
P.V. Sudakar for the Petitioner. TNC. Kaushik, Additional Government Pleader for the Respondent.
ORDER
1. Mr.TNC.Kaushik, learned Additional Government Pleader, takes notice for the respondent.
2. With the consent of the learned counsel for the Petitioner and learned Additional Government Pleader for the respondent, this Writ Petition is being disposed of at the time of admission.
3. The petitioner is before this Court against the impugned order dated 25.02.2025, whereby part of the demand proposed in the Show Cause Notice in DRC-01 dated 25.11.2024 has been confirmed after considering the petitioner’s reply dated 23.02.2025.
4. The aforesaid Show Cause Notice pointed out four defects. Out of these four defects, the demand in respect of defect No. 2 has been dropped. As far as defect No. 4 is concerned, the petitioner has accepted to pay the late fee leviable under Section 47 of the respective GST enactments.
5. The petitioner submits that as far as defect No. 1, on account of outward supplies captured GSTR-09 is concerned, the total tax due arrived at was Rs. 4,14,998 (207499 + 207499). It is submitted that the entire tax amount was paid by the petitioner on 19.12.2022 from the petitioner’s electronic credit ledger and therefore, the imposition of interest was unjustified.
6. That apart, it is submitted that this amount was paid prior to issuance of the notice in DRC-01 dated 25.11.2024 and therefore, it is submitted that the impugned order dated 25.02.2025 does not merit any interference.
7. As far as defect No. 3 is concerned, the learned counsel for the petitioner submits that as against the proposal contained in the Show Cause Notice in DRC-01 dated 25.11.2024, the amount that has been confirmed is Rs.48,835/- towards CGST and Rs.48,835 towards SGST/-.
8. It is submitted that the petitioner has secured certificates from the suppliers and therefore, the petitioner may be given an opportunity to explain the case afresh.
9. The learned Additional Government Pleader for the respondents submits that there are several disputed questions of fact and therefore, the petitioner ought to file a Statutory appeal before the Appellate Authority under Section 107 of the respective GST enactments and therefore, the impugned order does not merit any interference.
10. Having considered the submissions made by the learned counsel for the petitioner and the learned Additional Government Pleader for the respondents, I am inclined to remit the matter back to the respondent to redo the exercise insofar as defect Nos. 1 and 3 are concerned.
11. As far as defect No.1 is concerned, the interest has to be calculated on the belated payment of tax, after comparing the delay with reference to the payment of tax in the monthly returns to be filed under Section 39 of the respective GST enactments in GSTR-3B and thereafter, interest has to be computed by taking note of the debit entry on 19.12.2022 as has been tabulated below the conclusions:
PaidFromToNo.of daysInterest
20749301-04-202119-12-202262764158
20749301-04-202119-12-202262764158

 

12. As far as defect No. 3 is concerned, the petitioner shall file necessary certificates to justify that the petitioner is entitled to the balance amount of input tax credit. The petitioner shall file the same within a period of thirty (30) days from the date of receipt of a copy of this order. The respondent shall thereafter proceed to pass final orders on merits after hearing the writ petitioner.
13. This writ petition stands disposed of with the above observations. No costs. Consequently, connected miscellaneous petitions are closed.
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About CA Satbir Singh

Chartered Accountant having 12+ years of Experience in Taxation , Finance and GST related matters and can be reached at Email : Taxheal@gmail.com