High Court Remands ITC Mismatch Case (GSTR-2A vs 3B) on Condition of 10% Pre-deposit
Issue
ITC Denial: Whether Input Tax Credit (ITC) can be denied due to a mismatch between GSTR-2A and GSTR-3B caused by technical glitches (lack of synchronization between GST portal and ICEGATE).
Extended Limitation: Whether the Revenue can invoke the extended period of limitation under Section 74 (alleging fraud/suppression) when the discrepancy arose from a system error during the initial GST period (July 2017 – March 2018).
Validity of Order: Whether an assessment order should be quashed if the assessee failed to reply on the merits of the allegation, relying only on legal arguments.
Facts
Period: July 2017 to March 2018 (Implementation phase of GST).
The Dispute: The petitioner claimed Input Tax Credit on IGST paid on imports. A mismatch occurred between the ITC claimed in GSTR-3B and the data reflected in GSTR-2A.
Reason for Mismatch: The assessee argued this was due to a technical glitch: the GST portal was not fully synchronized with the ICEGATE portal (Customs), preventing the auto-population of credit.
Show Cause Notice (SCN): The Department issued an SCN based on an audit report, invoking the extended period of limitation under Section 74.
Assessee’s Error: In their reply to the SCN, the assessee focused solely on legal submissions (challenging the limitation period and clarity of notice) and failed to address the factual merits of the discrepancy.
Impugned Order: Consequently, the authority confirmed the demand, noting there was no factual rebuttal.
Decision
Assessee’s Failure: The High Court noted that the challenge to the order was initially weak because the assessee had not provided a reply on the merits, leaving the authority with no option but to confirm the demand.
Remand for Justice: However, recognizing that the issue stemmed from the initial GST transition period and technical difficulties, the Court decided to give the assessee another opportunity to prove their case on facts.
Condition Imposed: The impugned order was quashed and the matter remitted back to the authority for fresh adjudication. This relief was granted subject to the condition that the assessee deposits 10% of the disputed tax from their Electronic Cash Ledger within 30 days. [In favour of assessee/Matter remanded]
Key Takeaways
Reply on Merits is Mandatory: Relying solely on technical legal arguments (like “limitation period”) without explaining the factual discrepancy (the “why” behind the mismatch) is a risky strategy. Always address the core allegation.
Transitional Glitches: Courts are generally lenient regarding errors occurred during the initial phase of GST (2017-18), provided there is proof of technical glitches (like ICEGATE sync issues).
Pre-deposit for Remand: If an assessee bypasses the statutory appeal route and approaches the High Court directly due to a botched reply, the Court often imposes a pre-deposit condition (similar to the 10% required for statutory appeals) to ensure bona fides.
W.M.P. No. 14551 of 2025