Remand for GSTR-1 & GSTR-3B Mismatch Analysis (FY 2020-21)

By | February 7, 2026

Remand for GSTR-1 & GSTR-3B Mismatch Analysis (FY 2020-21)


1. The Core Dispute: Clerical Error vs. Tax Liability

The dispute arose from a significant discrepancy identified between the assessee’s GSTR-1 (Statement of Outward Supplies) and GSTR-3B (Monthly Summary Return). The Revenue noted that the liability reported in GSTR-3B was less than that in GSTR-1, leading to a demand for the difference.

  • The Error: The assessee explained that they had inadvertently entered the taxable values twice in GSTR-1. While they rectified this “double entry” by paying the correct tax in GSTR-3B, the system-generated mismatch remained on record.

  • The Conflict: The Assessing Authority ignored the explanation and confirmed the demand in the final order, essentially taxing the assessee on a “phantom” liability created by a clerical typo.


2. Legal Analysis: The Principle of “Substance over Form”

The High Court observed that in the GST regime, clerical and typographical errors in return filing are common. If an assessee can prove through supporting documents (such as sales registers and bank statements) that the GSTR-1 value was indeed a double entry, they cannot be forced to pay tax on a non-existent supply.

I. Opportunity for Personal Hearing

The court emphasized that where a genuine mistake is claimed, a mere summary rejection of the explanation without a thorough verification of the accounts violates the principles of Natural Justice.

II. The “25% Deposit” Condition

To balance the interest of the Revenue and the assessee, the Madras High Court has adopted a consistent “remand policy”:

  • The assessee is granted another chance to prove their case.

  • In return, the assessee must demonstrate their bona fides by depositing 25% of the disputed tax amount.


3. The Ruling: Quashing and Remand

The High Court quashed the original demand order and sent the case back to the respondent authority.

  • Directive to Assessee: Deposit 25% of the disputed tax in cash (via Electronic Cash Ledger) within 30 days.

  • Directive to Revenue: Upon receipt of the deposit and a detailed reply with proof, the authority must pass a fresh order after granting a personal hearing.

  • Outcome: The assessee gets a chance to delete the “double entry” liability through de-novo adjudication.


Key Takeaways for Taxpayers

  • Reconcile Regularly: [Image showing the GSTR-1 vs GSTR-3B Mismatch Dashboard on the GST Portal] Always compare your GSTR-1 data with GSTR-3B before the final filing. Mistakes in GSTR-1 can now lead to Rule 88C intimations (DRC-01B) and immediate recovery action if not explained.

  • Documentation is Shield: Keep a “Sales Reconciliation Statement” ready that maps your invoices to your bank receipts. This is the primary evidence needed to win “mismatch” cases.

  • Writ as a Remedy: If an order is passed mechanically without considering your evidence of a “clerical error,” the High Court can be approached for a remand, provided you are willing to make a partial pre-deposit.

HIGH COURT OF MADRAS
Sri Saru Pharma
v.
Assistant Commissioner (ST), Coimbatore*
C. Saravanan, J.
WP No. 49096 of 2025
W.M.P. Nos. 54844 & 54845 of 2025
DECEMBER  16, 2025
J. Madhusuthanan for the Petitioner. Mrs.K. Vasanthamala, Govt. Adv. for the Petitioner.
ORDER
1. Mrs.K.Vasanthamala, learned Government Advocate takes notice for the Respondent.
2. This Writ Petition is being disposed of at the stage of admission itself with the consent of the learned counsel for the Petitioner and the learned Government Advocate for the Respondent.
3. The Petitioner is before this Court against the impugned order dated 17.02.2025. By the impugned order, the demand proposed in Show Cause Notice in DRC-01 dated 26.11.2024 for the tax period 2020-2021 has been confirmed. It is noticed that the Petitioner had also filed a reply on 26.04.2024, content of which has been extracted in the impugned order, which reads as follows:
“We are providing the following information as required by you
1. OUTWARD MISMATCH (GSTR 1 v. 3B):
Query: Liability Reported in GSTR-3B less than GSTR-1 by Rs.1,00,000/- and above for all the assessment years
YearCGSTSGSTIGST
2020-212020852020850

 

Explanation: We would like to notify you that we have entered the GSTR 1 value twice, which increases the taxable value for the fiscal year 2020-2021. There will be a discrepancy in the annual filings based on GSTR 1, despite the fact that we fixed it in GSTR 3B.
1.In accordance with the prior year (FY 2019-2020), we filed tax returns on a quarterly basis. As a result, we reported the B2C value incorrectly due to human error. Thus, it demonstrates the Rs.1,34,099.00 liability shortfall in FY 2019-2020 and it has been corrected in the June 2020.
2.The taxable value for the fiscal year 2020-2021 has increased as a result of our double entry of the GSTR 1, B2C value. The yearly filings based on GSTR 1 will show a difference even though we corrected it is GSTR 3B, resulting in a liability shortfall of Rs.2,70,419.4. This has been fixed in FY 2021-2022.”
4. The learned counsel for the Petitioner submits that the mistake is genuine as explained above. However, would like one more opportunity to explain the case with supporting documents.
5. Learned counsel for the Petitioner however submits that the Petitioner is willing to deposit 25% of the disputed tax.
6. Recording the above submission and following the consistent view taken under similar circumstances, the impugned order is quashed and the case is remitted back to the Respondent to pass a fresh order on merits subject to the Petitioner depositing 25% of the disputed tax in cash from the Petitioner’s Electronic Cash Register within a period of thirty (30) days from the date of receipt of a copy of this order and filing a detailed reply with supporting documents. Subject to the Petitioner complying with the above stipulations, the attachment of the bank account of the Petitioner, if any made already, shall also stand automatically vacated.
7. Any amount already recovered/paid by the Petitioner towards the tax liability confirmed under the impugned order shall be adjusted towards the predeposit of 25% as ordered above, subject to verification.
8. In case the Petitioner complies with the above stipulations, the Respondent shall proceed to pass a final order on merits and in accordance with law as expeditiously as possible, preferably, within a period of three (3) months of such reply/pre-deposit.
9. It is made clear that bank attachment shall be lifted subject to the deposit of 25% of the disputed tax as ordered above and the Petitioner is not in arrears of any other amount barring the amount demanded under the impugned Order.
10. In case the Petitioner fails to comply with any of the stipulations, the Respondent is at liberty to proceed against the Petitioner to recover the tax in accordance with law as if this Writ Petition was dismissed in limine today.
11. Needless to state, before passing any such order, the Respondent shall give due notice to the Petitioner.
12. This Writ Petition stands disposed of with the above observations. No costs. Connected Writ Miscellaneous Petitions are closed.
Category: GST

About CA Satbir Singh

Chartered Accountant having 12+ years of Experience in Taxation , Finance and GST related matters and can be reached at Email : Taxheal@gmail.com