Supreme Court Rejects Revenue’s Appeal; Income Tax Refunds Cannot be Set Off Against Service Tax Dues.

By | April 4, 2026

Supreme Court Rejects Revenue’s Appeal; Income Tax Refunds Cannot be Set Off Against Service Tax Dues.

  • The Conflict: The assessee was owed an Income Tax refund for AY 2018-19. Simultaneously, the Service Tax department (DGCEI) issued a Garnishee Notice under the Finance Act, 1994, ordering the Income Tax department to hand over that refund to cover unpaid Service Tax.

  • The Amnesty Scheme: The assessee applied for the Sabka Vishwas (Legacy Dispute Resolution) Scheme, 2019 (SVLDRS), which significantly reduced their liability. They asked the DGCEI to modify the Garnishee Notice so the Income Tax refund could be used to pay the reduced “settlement amount” before the June 30, 2020 deadline.

  • The Failure: The DGCEI refused to modify the notice, the Income Tax department refused to release the refund, and eventually, the Income Tax department paid the original higher amount to the Service Tax department—causing the assessee to “default” on the amnesty scheme.


II. Key Legal Principles Established

1. Scope of Section 245 (Income Tax Act)

The High Court held that the Income Tax Department is a “creature of the statute.” Section 245 specifically limits the power of set-off to Income Tax dues only. Diverting a refund to the Service Tax department is a violation of the Act.

2. The Duty to Amend Garnishee Notices

Under Circular No. 996/3/2015-CX, the authorities have the power to amend or withdraw Garnishee Notices. The Court ruled that when a taxpayer’s liability is reduced under a scheme like SVLDRS, it is the “bounden duty” of the officer to modify the notice to reflect the lower amount.

3. Income Tax Department is not an “Assessee”

The Service Tax department cannot treat the Income Tax department as an “assessee in default” to seize funds. Since the Income Tax department is a government wing, it is exempt from service tax under the negative list (Section 66D).

4. Liberal Interpretation of SVLDRS

The Sabka Vishwas Scheme is a “one-time measure” intended to “unload the baggage” of past disputes. The Court emphasized that such beneficial schemes must be interpreted liberally to help businesses move on, rather than using narrow technicalities to trap them.


III. The Supreme Court’s Final Word

The Supreme Court dismissed the Revenue’s appeal (SLP) on two grounds:

  1. Gross Delay: The Revenue filed the appeal 544 days late without a sufficient explanation.

  2. Infructuous: The matter was deemed to have lost its practical relevance over time, but the High Court’s findings in favor of the assessee remain intact.


Key Takeaways for Taxpayers

  • Refund Protection: Your Income Tax refund cannot be “hijacked” by other departments (GST, Service Tax, Customs) unless there is a specific legal provision allowing such a cross-departmental set-off, which currently does not exist under Section 245.

  • Amnesty Compliance: If a government delay (like refusing to release a refund) prevents you from paying a settlement amount under a scheme like SVLDRS, the courts will treat the payment as “deemed to have been made” to ensure you aren’t penalized for the State’s inaction.

  • Garnishee Rights: If your liability is reduced in an appeal or a scheme, you have the legal right to demand an immediate amendment of any active Garnishee Notices.

SUPREME COURT OF INDIA
Directorate General of GST Inttelligence (DGGI)
v.
SEW Infrastructure Ltd.*
Mrs. B.V. Nagarathna and Ujjal Bhuyan, JJ.
SLP (CIVIL) DIARY NO (S). 48919 of 2023
MARCH  9, 2026
N. Venkatraman, A.S.G., Gurmeet Singh Makker, AOR, V.C. BharathiShantnu SharmaVivek Gupta and Amit Sharma-II, Advs. for the Petitioner. Gaurav Aggarwal, Sr. Adv., Shravanth Paruchuri, AOR, Nithin Chowdary PavuluriMullapudi RambabuSubham Saurabh and Praveen Kumar Sharma, Advs. for the Respondent.
ORDER
1. Learned senior counsel appearing for the respondents submitted that there is a gross delay of 544 days in filing this Special Leave Petition and therefore, the petition may be dismissed on the ground of delay and laches. Secondly, the impugned order has been complied with by the Department and therefore this Court may consider the matter on merits as it has been rendered infructuous.
2. Taking note of this submission, we dismiss this Special Leave Petition both on the ground of delay and as having been rendered infructuous.
3. Pending application(s), if any, shall stand disposed of.