Denial of Input Tax Credit Due to GSTR-3B and GSTR-2A Mismatch Upheld; Writ Remedy Not Suitable When Appellate Remedy Exists

By | May 21, 2025

Denial of Input Tax Credit Due to GSTR-3B and GSTR-2A Mismatch Upheld; Writ Remedy Not Suitable When Appellate Remedy Exists

Issue:

Whether a writ petition is maintainable against an order confirming a demand for differential Input Tax Credit (ITC) due to a mismatch between GSTR-3B and GSTR-2A, when an alternate remedy of appeal under Section 107 of the CGST Act is available, especially if the assessee failed to rectify the alleged error at earlier stages.

Facts:

For the period 2020-21, an order was passed confirming a demand for differential ITC, interest, and penalty, based on a mismatch between the ITC availed in the assessee’s GSTR-3B returns and the ITC available as per GSTR-2A. The assessee filed a writ petition challenging this demand. The Single Judge dismissed the writ petition, citing the availability of an appellate remedy under Section 107 of the CGST Act, and granted the assessee liberty to approach the appellate authority. In an intra-court appeal, the assessee contended that the mismatch was due to a payment made under a “different head wrongly.” However, the assessee had not attempted to rectify this alleged accounting error either before or after the show cause notice (SCN) was issued, or during the detailed scrutiny of their accounts. It was only after the SCN was issued that the assessee raised the defense of wrong payment and withdrawal, drawing support from a High Court judgment and circulars regarding rectification limitations.

Decision:

The court held that there was no reason to interfere with the impugned order of the Single Judge. The court noted that the assessee had not taken steps to rectify the alleged mismatch at earlier stages (before or after the SCN, or during scrutiny). The defense of wrong payment and withdrawal was raised only after the SCN. Crucially, the court emphasized that the assessee was not left without a remedy, as the Single Judge had already preserved their right to appeal. Therefore, the intra-court appeal was dismissed.

Key Takeaways:

  • Availability of Alternate Remedy: The case strongly reinforces the principle that writ petitions are generally not entertained when an efficacious alternate statutory remedy (like an appeal under Section 107 of the CGST Act) is available. Courts prefer that assessees exhaust the appellate mechanism first.
  • Timely Rectification of Errors: Assessees are expected to be diligent in maintaining their accounts and rectifying errors promptly. Raising a defense of “wrong payment” only after the issuance of a show cause notice and confirmation of demand may weaken the assessee’s position in court.
  • Burden of Proof for Mismatch: The onus is on the assessee to reconcile discrepancies between GSTR-3B and GSTR-2A and provide satisfactory explanations and evidence if a mismatch leads to a demand.
  • Procedural Compliance: This ruling underscores the importance of adhering to the prescribed procedures under the GST law, including responding to show cause notices comprehensively and rectifying errors in a timely manner.
  • Limited Scope of Writ Jurisdiction in Tax Matters: While writ jurisdiction is a powerful tool, its application in tax matters is typically limited to cases involving fundamental rights violations, jurisdictional errors, or a complete absence of alternative remedies. Simple disputes of fact or application of law are usually left to the appellate authorities.
HIGH COURT OF MADRAS
Nikitha Traders
v.
Superintendent of CGST and Central Excise
DR. G. JAYACHANDRAN and Mrs. S. Srimathy, JJ.
W.A. (MD) No. 977 of 2025
C.M.P (MD) No. 6194 of 2025
APRIL  24, 2025
Ms. Vishnu Priya for the Appellant. R. Gowri Shankar, Sr. St. Counsel for the Respondent.
JUDGMENT
S. Srimathy J. – M/s Nikitha Traders, a proprietary concern is the appellant herein. Being aggrieved by the order of the respondent herein, the writ petition is filed seeking a writ of certiorari and the same got dismissed. Hence, the intra court appeal.
2. The case of the appellant is that, for the period between April 2020 to March 2021, the assessment order in original No.MAD-GST-SUP-13/2025/SUPDT (South Range), dated 28.01.2025 passed by the Superintendent of CGST and Central Excise, South Range-1, Madurai,
(a)confirmed the demand of Rs.13,24,403/- being the difference between Input Tax Credit (ITC) availed in GSTR -3B and ITC available as per GSTR – 2A and appropriated a sum of Rs.17,382/-.
(b)confirmed the demand of interest for excess availment of ITC for the relevant period and appropriated a sum of Rs.12,255/- and
(c)imposed penalty of Rs.1,30,702/- for the commission of the offence under Section 122(2)(a) r/w Section 73(9) of CGST /TNGST Act 2017 and Section 20 of IGST Act, 2017. Following the assessment Order, the summary of the order in Form GST DRC – 07 issued on 29.01.2025. These two orders are impugned in the writ petition seeking certiorari.
3. The Learned Single Judge, after perusing the orders impugned, pointing out that Section 107 of the CGST Act provides right of appeal before the Joint Commissioner of GST and CE (Appeals), dismissed the writ petition granting liberty to the writ petitioner to approach the appellate authority and raise all the grounds raised in the Writ Petition and get redressed. Further, the learned single Judge also directed the appellate authority to entertain the appeal if filed within two weeks from the date of the order. To consider the appeal in accordance with law and dispose it within a period of 3 months thereafter.
4. The learned Counsel for the appellant canvassed before this Court that, the assessment order and the order imposing penalty was not in accordance with the circulars of the Department and the judgments of the Hon’ble Supreme Court and High Court. The circulars and the judgments says, the assessment of ITC in case of wrong filing of GSTR I and wrong claiming of ITC amount, is error rectifiable. While so, in spite of explaining the reason for mismatching in ITC through the reply dated 13.12.2024 along with documents, the respondent herein had passed order, without affording opportunity to rectify.
5. In support of the said argument, the learned Counsel had relied upon the judgment of this Court in WP(MD) No.6459 of 2024/Tvl.Thendral Electricals v. Commissioner of Commercial Taxesin 2024 (9) TMI 1472 MHC and the order in CBDT and Customs v. Aberdare Technologies Pvt Ltd [SLP (civil) Dairy No.6332 of 2025, dated 21.03.2025].
6. In the light of the judgments referred, the perusal of the assessment order, we find that the reply of the assessee / the appellant herein been considered and found neither the judgments relied by him is applicable to his case nor the contention that the mismatch was due to payment under different head wrongly is correct. The respondent herein, after discussing the law and the facts of the case, at paragraph 10 of the order, had assigned reason for not accepting the explanation given. In the order, the assessee is informed about the right of appeal available to him under the statute.
7. While so, when alternate efficacious remedy provided under the statute, the appellant, without availing the remedy under the statute by filing the appeal after deposit of 10% of the duty and penalty demanded, to circumvent the condition, had approached the High Court invoking the writ jurisdiction.
8. We also find that, the statute provides for rectifying the defective or erroneous filing of return under wrong provision/ Form. The appellant had not come forward either prior to the show cause notice or after it or during the detailed scrutiny of his account to rectify the account. Only after the issuance of Show Cause Notice, taking cue from the judgment of the High Court and the circulars issued regarding limitation for rectification, a defence of wrong payment and withdrawal is put forth. Even now, the appellant is not left without remedy. The Learned Single Judge has preserved his right of appeal and the grounds of appeal to be tested before the Appellate Authority.
9. Therefore, we find no reason to interfere in the order of the learned single Judge passed in W.P(MD)No.6457 of 2025, dated 11.03.2025. Hence, the writ appeal stands dismissed. The time to file statutory appeal is extended by 15 days. No costs. Consequently, the connected miscellaneous petition is also closed.
Category: GST

About CA Satbir Singh

Chartered Accountant having 12+ years of Experience in Taxation , Finance and GST related matters and can be reached at Email : Taxheal@gmail.com