A refund cannot be denied for a TDS mismatch if the assessee filed a revised return in time and the revenue neither rejected it nor communicated any defect

By | June 25, 2025

A refund cannot be denied for a TDS mismatch if the assessee filed a revised return in time and the revenue neither rejected it nor communicated any defect

Issue

  1. Whether the revenue department can legally ignore a revised return of income that was filed within the prescribed time to cure a defect notified under Section 139(9).
  2. Is a mismatch between disclosed income and TDS details a sufficient ground for the revenue to neither process nor reject a revised return, thereby withholding a refund?
  3. Is the assessee entitled to have their refund claim considered and adjusted against a tax liability determined in a subsequent assessment under Section 153C, when their revised return was never acted upon by the department?

Facts

For the assessment year 2016-17, the assessee filed an income tax return under Section 139(1), claiming a refund of excess tax paid. The Central Processing Centre (CPC) issued a notice under Section 139(9), treating the return as defective due to a mismatch between the income reported and the Tax Deducted at Source (TDS) details.

In response, the assessee filed a revised return within the statutory time limit to rectify the defect. However, the revenue department took no further action. It neither processed the revised return to issue the refund nor did it send any communication to the assessee rejecting the revised return. Subsequently, an assessment order under Section 153C was passed against the assessee, determining a tax liability. The assessee then filed an application for rectification, requesting that the refund claimed in the un-processed revised return be adjusted against this liability. During the court proceedings, the counsel for the revenue stated that this rectification application would be processed.

Decision

The High Court disposed of the writ petition in favour of the assessee by holding the revenue department to its statement.

The Court made the following key observations:

  • It was an admitted fact that the revenue never communicated any intimation to the assessee that the revised return was also defective or was being rejected.
  • A discrepancy between the income disclosed in a return and the TDS data available with the department may be a valid reason for further inquiry to verify the correctness of the income, but it cannot be a ground for the revenue to completely ignore the return itself.
  • Given the statement made by the revenue’s counsel that the assessee’s rectification application would be processed to grant the refund after adjusting the tax liability determined under the Section 153C order, the Court bound the revenue to this commitment.
  • The petition was disposed of with a specific direction that the revenue department must adhere to the statement made before the Court.

Key Takeaways

  • Duty to Process Returns: The revenue department is under a statutory obligation to process every return of income filed. It cannot simply fail to act on a return, especially a revised one filed to cure a defect.
  • Communication is Mandatory: If the revenue department finds a revised return to be defective or unacceptable, it must communicate this to the assessee. Inaction or silence is not a legally valid response.
  • TDS Mismatch is for Inquiry, Not Rejection: A mismatch in TDS details is a ground for inquiry and verification, not for summarily ignoring a filed return and withholding a refund without due process.
  • Binding Nature of Statements in Court: An undertaking or statement made by the revenue’s counsel before a court is binding, and the court can issue a writ to enforce compliance with such a statement.
  • Right to Refund: An assessee’s right to a legitimate refund cannot be defeated by the procedural inaction of the tax department.
HIGH COURT OF DELHI
Mukesh Garg
v.
Assistant Commissioner of Income-tax
Vibhu Bakhru and TEJAS KARIA, JJ.
W.P.(C) No.13914 of 2022
MAY  27, 2025
Ved JainNischay KantoorMs. Sonia Dodeja and Sarthak Abrol, Advs. for the Petitioner. Anurag Ojha, SSC, V.K. SaksenaMs. Hemlata RawatDipak Raj, JSCs and Ms. Garima Kumar, Adv. for the Respondent.
ORDER
Vibhu Bakhru, J.- The petitioner has filed the present petition, inter alia, praying that the respondents be directed to process the petitioner’s return in respect of Assessment Year [AY] 2016-17 and to refund an amount of Rs.1,16,94,870/-on account of excess tax alongwith interest in accordance with law.
2. The petitioner had filed his original return of income under Section 139(1) of the Income Tax Act, 1961 [the Act] declaring an income of Rs. 2,39,05,340/-, on 26.08.2016. The Assessee had computed the tax on the said amount at Rs. 80,71,280/- after accounting for the advance tax of Rs. 55,00,000/- and Tax Deducted at Source [TDS] of Rs.1,42,66,154/-. On this basis, the petitioner computed its refund at Rs.1,16,94,870/- and claimed the same in terms of the said return.
3. Thereafter, on 10.08.2017, a notice of deficiency was issued to the petitioner under Section 139(9) the Act by Centralized Processing Centre, Bangalore [CPC], informing the petitioner that the original return filed by the petitioner was defective as the TDS claimed was not commensurate with the income offered to tax in terms of Section 139(9) of the Act. The petitioner was given a period of fifteen days to rectify the said defect.
4. The petitioner filed a rectified return on 16.08.2017, which was within the fifteen day period as provided. The petitioner also computed his claim for refund of Rs.1,16,94,870/- on the basis of its computation of income.
5. The petitioner did not receive any information from the Revenue regarding his revised return or claim of refund. The time period of processing the return expired on 31.03.2018. However, the status of the petitioner’s return continues to be reflected as „under process’.
6. It is the Revenue’s case that since the petitioner’s return was defective and the defects were not cured, the return was not processed. Thus, the petitioner was also not granted the refund as claimed.
7. The present petition was taken up for hearing on 19.05.2025 and after hearing some arguments, the hearing was adjourned to enable the learned counsel for the Revenue to take instruction. The said order reads as under:
“1. It is contended on behalf of the Revenue that that there is no requirement to pass any order or record reasons that the return as refiled is defective.
2. After some arguments, the learned counsel for the Revenue seeks some time to take instructions and unequivocally affirm that: (a) that the Revenue does not have access to any order whereby the petitioner’s return has been found invalid after the petitioner had filed a return pursuant to the defects pointed out; (b) that there is no recording of any sought, which records that the return as revised is invalid; (c) that no intimation was sent to the petitioner that its return as revised is defective.
3. Let an affidavit be filed within a period of one week from date.
4. List on 22.05.2025.”
8. Pursuant to the aforesaid order, an affidavit was filed on behalf of the Revenue which unequivocally affirms as under:
” 4. I state:
(a)that the Respondent does not have access to any order whereby the petitioner’s return has been found invalid after the petitioner had filed a return pursuant to the defects pointed out;
(b)that there is no recording of any sought, which records that the return as revised is invalid; and
(c)that no intimation was sent to the petitioner that its return as revised is defective.”
9. It was submitted on behalf of the Revenue, that the revised return filed by the petitioner on 16.08.2017 was also considered defective and therefore, was not processed. We find little merit in the said contention as the affidavit on behalf of the Revenue states, in unambiguous terms, that there is no recording of any sought in the records of the Revenue which records that the revised return filed by the petitioner, is invalid. Thus, we are unable to accept that any decision in this regard was rendered by the AO or any other authority as it finds no mention in any of the records of the Revenue. As is borne out from extract of the affidavit, admittedly no intimation of the revised return filed by the Revenue, as noted above being defective was ever communicated to the petitioner.
10. We also find the objection to the effect that TDS does not match with the return of income of an assessee, cannot be considered as a ground for disregarding the return filed by an assesee. The finding of discrepancy between the return filed and the TDS collected/deposited by the deductors may pose a ground for further inquiry and to test whether the amount of income which has been disclosed by an assessee is true and correct. But, it cannot be a ground for the Revenue to totally ignore the same.
11. Mr. Saksena, the learned counsel for the Revenue further submitted that on account of a search conducted in respect of another person, notices under Section 153C of the Act were issued for assessing the petitioner’s income for AY 2016-17. The re-assessment proceedings culminated in an assessment order dated 31.05.2023 passed by the Assessing Oficer [AO] under Section 153C of the Act, whereby the AO has made an addition of Rs. 76,62,180/- and the petitioner’s income has been assessed at Rs. 3,15,67,800/-.
12. He submitted that the petitioner may apply for rectification of the said assessment order to also include the refund and the AO shall process the same. However, the learned counsel of the petitioner points out that the petitioner’s requests to the aforesaid effect were not considered on the ground that the proceedings under Section 153C of the Act cannot accrue to the benefit of the assessee and no refund could be processed as the intital return was found defective.
13. We do not consider it apposite to examine this issue in these proceedings for essentially two reasons. First, we find that the petitioner’s return as rectified could not be ignored as stated earlier. Since no addition has been made by the AO on the scrutiny of the return at the intital stage, the petitioner’s claim for refund was required to be processed. Second, that the learned counsel for the Revenue, on instructions, has made a statement that the petitioner’s application for rectification of the assessment order passed under Section 153C of the Act to seek grant of refund on account of the excess tax paid after adjusting the tax liability in terms of the assessment order under Section 153C of the Act would be processed.
14. We find no grounds to reject the same.
15. In view of the above, the present petition is disposed of albeit with a direction that the Revenue would be bound down to the statement made in this court. It is also made clear that the petitioner is at liberty to file the rectification application relying on the amount of Advance Tax and TDS as reflected in Form 26AS.
16. In view of our finding that the refund due to the petitioner was required to be processed; the assessment order passed under Section 153C determining a lesser amount of refund due to the additions made, cannot be considered as providing an advantage to the petitioner in proceedings under Section 153C of the Act.