Best Judgment Assessment Orders Stand Deemed Withdrawn Upon Subsequent Filing of GSTR-3B with Late Fees

By | May 13, 2026

Best Judgment Assessment Orders Stand Deemed Withdrawn Upon Subsequent Filing of GSTR-3B with Late Fees

Issue

Whether assessment orders passed under Section 62 for non-filing of returns are deemed withdrawn when the assessee subsequently files the pending GSTR-3B returns along with the applicable late fees.

Facts

  • Default: The petitioner, a registered GST taxpayer, failed to file GSTR-3B returns for the period of November 2022, December 2022, and January 2023.

  • Revenue Action: Due to the non-filing, the Proper Officer passed best judgment assessment orders under Section 62 and initiated recovery proceedings, including bank account attachments.

  • Compliance: Subsequent to the assessment orders, the petitioner filed the GSTR-3B returns for all three months and paid the requisite late fees.

  • Legal Question: The petitioner sought a declaration that the filing of returns effectively nullified the best judgment orders and the consequential recovery actions.

Decision

  • Statutory Withdrawal: The court held that under the GST statutory scheme, best judgment orders for non-filers are deemed withdrawn once the taxpayer furnishes the valid returns within the prescribed timeframe (or extended timeframe upon payment of late fees).

  • Validation of Filing: Since the petitioner successfully paid the late fees and furnished the returns for the disputed months, the conditions for deemed withdrawal were met.

  • Quashing of Recovery: Consequently, the best judgment assessment orders were declared withdrawn, and the writ petitions were allowed.

  • Release of Assets: The court ordered that any bank attachments or recovery actions initiated under the now-withdrawn orders be set aside.

  • Result: The decision was rendered in favor of the assessee.

Key Takeaways

  • Self-Correction Mechanism: Section 62 provides a “deemed withdrawal” mechanism that rewards subsequent compliance, even if the returns are filed after a best judgment order has been passed.

  • Late Fees as Enablers: The payment of late fees is the essential procedural requirement that allows a non-filer to resolve their status and trigger the withdrawal of ex-parte assessment orders.

  • Recovery Cessation: Once a return is filed and the assessment is deemed withdrawn, the Revenue loses the legal basis to maintain bank attachments or other recovery measures related to that specific assessment.

HIGH COURT OF ANDHRA PRADESH
Vijayalakshmi Housing
v.
Assistant Commissioner, (ST)(FAC), Vijayawada*
R RAGHUNANDAN RAO and T.C.D. Sekhar, JJ.
WRIT PETITION NOS. 3534, 3539 & 3540 of 2026
MARCH  16, 2026
Anil Kumar Bezawada for the Petitioner.
ORDER
R. Raghunandan Rao, J.- As the issues raised in these three Writ Petitions are the same and they are being disposed of, by way of this Common Order.
2. The petitioner was served with three separate orders of assessment for the months of November 2022, December 2022 and January, 2023. These orders had been passed under Section 62 of the GST Act on the ground that the petitioner had not been filing his returns.
3. The petitioner has approached this Court with the contention that the respondents are seeking to recover the amounts demanded under the said orders of assessment despite the fact that the petitioner had filed his returns, in Form GSTR 3B for the relevant period along with late fee. It is contended that no tax or interest was payable as the returns related to exempted turnovers.
4. The details of the dates of the demand order, dates of filing of returns etc., are set out in the table below:
W.P.No. Month Date of impugned Demand Order Date of filing of Form GSTR 3B CGST late fees u/s 62(2) SGST Late fees u/s 62(2)
3534/2026 Nov-22 04.03.2023 08.11.2023 18,900 18,900
3539/2026 Dec-22 10.03.2023 08.11.2023 18,300 18,300
3540/2026 Jan-23 12.05.2023 08.11.2023 12,000 12,000
49,200 49,200

 

5. Section 62(2) of the GST Act stipulates that any order passed under Section 62, would be deemed to have been withdrawn once necessary returns are filed within the period stipulated under the said provision. In the event of delay, late fee is required to be paid by the registered person who seeks to file the said returns.
6. In the present case, the petitioner is said to have paid the necessary late fee. In such circumstances, it would have to be deemed that the orders, detailed above, passed under Section 62 of the GST Act are deemed to have been withdrawn.
7. Accordingly, these Writ petitions are ordered. Bank attachments, if any, caused under the aforesaid orders of assessment, shall stand set aside.
8As a sequel, pending miscellaneous petitions, if any, shall stand closed. There shall be no order as to costs.
Category: GST

About CA Satbir Singh

Chartered Accountant having 12+ years of Experience in Taxation , Finance and GST related matters and can be reached at Email : Taxheal@gmail.com