Delayed GSTR-3B Filing: Writ Petition Not Entertained; Assessee Directed to Appellate Remedy for ITC Denial

By | May 24, 2025

Delayed GSTR-3B Filing: Writ Petition Not Entertained; Assessee Directed to Appellate Remedy for ITC Denial

Issue: Whether a High Court, in its writ jurisdiction, should intervene to condone a 14-day delay in filing GSTR-3B returns (beyond the Section 16(4) deadline) and quash a demand for denied Input Tax Credit (ITC), where such intervention would require factual appreciation and an effective appellate remedy exists.

Facts:

  • For the period 2020-21, the assessee was required to file GSTR-3B returns by November 30, 2021, as per the prescribed deadline under Section 16(4) of the CGST Act for availing ITC.
  • However, the assessee filed the returns on December 14, 2021, a delay of 14 days.
  • Due to this delay, the availment of ITC was not permitted to the assessee, and consequently, a demand was raised by the tax authorities.
  • The assessee contended that the 14-day delay should be condoned, and the demand quashed, particularly as they had already deposited late payment charges.
  • The case implicitly involves the interpretation of Section 16(4) and any potential for condonation of delay in availing ITC.

Decision: The court held that the question of the effect of non-filing of returns within the prescribed period, and whether there was a lapse on the part of the petitioner in curing deficiencies (such as those pointed out by a deficiency memo), constituted factual aspects that would need to be appreciated by the Appellate Authority. Therefore, the assessee was directed to avail the appellate remedy under Section 107 of the CGST Act. The decision was in favor of the revenue (meaning the writ petition was not allowed).

Key Takeaways:

  • Strict Adherence to ITC Time Limits: Section 16(4) of the CGST Act (at the time of the facts of this case) sets a strict deadline for availing Input Tax Credit. Non-filing of returns or delayed filing beyond this deadline can lead to the denial of ITC.
  • Factual Matrix for Appellate Authority: The court emphasized that determining the “effect of non-filing” and whether “deficiencies were cured” are factual inquiries. Appellate authorities (like the Commissioner (Appeals) under Section 107) are specifically designed to delve into such factual matrices and interpret the law in light of those facts.
  • Limited Scope of Writ Jurisdiction: High Courts generally exercise writ jurisdiction cautiously, especially in tax matters where comprehensive statutory appellate mechanisms are provided. A writ petition is not a substitute for an appeal to review factual determinations or discretion exercised by tax authorities.
  • Condonation of Delay not Automatic: While the assessee argued for condonation of the 14-day delay, such condonation is usually within the purview of specific statutory provisions or discretionary powers of appellate authorities, not typically granted directly through writ petitions unless there’s a clear violation of law or natural justice. The mere deposit of late payment charges does not automatically cure the default in ITC availment within the prescribed period.
  • Exhaustion of Alternate Remedy: The core principle reiterated is the need for the assessee to first exhaust the available statutory appellate remedies before approaching the High Court through a writ petition, especially when factual disputes or questions of statutory interpretation on specific facts are involved.

Self-correction: The query mentioned Section 16(5). Based on the search, Section 16(5) was inserted by the Finance Act, 2024, with retrospective effect from July 1, 2017, to provide an extended timeframe for ITC claims for certain financial years (2017-18 to 2020-21) if filed up to November 30, 2021. The facts of the case concern the period 2020-21 and a filing date of December 14, 2021. So, while the assessee missed the original deadline of November 30, 2021, mentioned in the new Section 16(5) for those specific years, the court’s reasoning still hinges on the factual aspects and the availability of an appellate remedy, rather than directly applying the new 16(5) or otherwise. The essence remains that factual matters for condonation of delay fall under the appellate authority.

HIGH COURT OF DELHI
Harsh Khanna and Sons HUF
v.
Assistant Commissioner GST Delhi East
PRATHIBA M. SINGH and Rajneesh Kumar Gupta, JJ.
W.P. (C) No. 5582 OF 2025
MAY  1, 2025
Akhil Krishan MagguVikas SareenAyush MittalMs. Maninder KaurMs. Oshin Maggu and Ms. Yashika Kaushik, Advs. for the Petitioner. Pranay Mohan Govil, Senior Standing Counsel for the Respondent.
ORDER
1. This hearing has been done through hybrid mode.
CM APPL. 25472/2025 (for exemption)
2. Allowed, subject to all just exceptions. Application is disposed of.
W.P.(C) 5582/2025 & CM APPL. 25471/2025 (for stay)
3. The present petition has been filed by the Petitioner – M/s Harsh Khanna and Sons HUF under Articles 226 and 227 of the Constitution of India, inter alia, seeking issuance of an appropriate writ assailing the Show Cause Notice bearing Reference No. ZD071124032468I dated 27th November, 2024 (hereinafter, ‘SCN’) issued by the Respondent- Assistant Commissioner, Laxmi Nagar Division, CGST Delhi East Commissionerate and Order-in-Original bearing No. 70/MSM/ADJ/AC/2024-25 dated 25th February, 2025 passed by the Respondent (hereinafter, ‘impugned order’).
4. The impugned order raises a demand in respect of the Input Tax Credit (hereinafter, ‘ITC’) availed by the Petitioner to the tune of Rs. 70,45,630/-. The operative portion of the order reads as under :
“(i)I confirm the demand ofITC of Rs. 70,45,630/- (IGST -Rs.67,31,943/-, CGST – Rs. 1,56,844/-, SGST – Rs. 1,56,843/-) (Rupees Seventy Lakh Forty Five Five Thousand Six Hundred and Thirty only) in violation of Section 16(4), 16(5) and 16(6) of the CGST Act, 2017 and order that the same be recovered from the Noticee under Section 73 of the CGST Act 2017 / DGST Act 2017 read with Section 20 of IGST Act 2017 and Rule 121 of the CGST Rules, 2017.
(ii)I hereby order for the recovery of interest at the appropriate rates on the tax amount mentioned at Sr.No.(i) above from the Noticee under Section 50 of the CGST ACT, read with responding section of the IGST Act, 2017 and SGST act, 2017;
(iii)I hereby order for the recovery of interest amounting to Rs. 2,01,218/- for delayed filing of GSTR 3B returns for the FY 2020-21 under Section 50 of the CGST ACT, read with corresponding section of the IGST Act, 2017 and SGST act, 2017;
(iv)I impose penalty of Rs.7,04,563/- (IGST -Rs. 6,73,194/-, CGST – Rs.15,684.5/-, SGST – Rs. 15,684.5/-) on the Noticee under Section 73 (9) of the CGST /DGST Act, 2017 read with Section 20 of IGST Act 2017 for wrong availment of ITC.
Assistant Commissioner
Laxmi Nagar Division
CGST Delhi (E) Commissionerate”
5. The issue that has arisen is in respect of the Petitioner’s belated filing of returns, which were to be filed by 30th November, 2021 but were filed on 14th December, 2021. Since the deadline under Section 16(5) of the Central Goods and Service Tax Act, 2017 (hereinafter, ‘CGST Act’) to file the returns is 30th November, 2021, the availment of the ITC has not been permitted to the Petitioner and hence, the demand has been raised.
6. A SCN was issued to the Petitioner on 27th November, 2024 along with personal hearing notices, however, the Petitioner did not file a reply or appear in the hearings, leading to passing of the impugned order.
7. The submissions of Mr. Akhil Krishan Maggu, ld. Counsel appearing for the Petitioner is that the delay of 14 days ought to be condoned and the demand deserves to be quashed as even the late payments charges have already been deposited by the Petitioner.
8. In the opinion of this Court, the question as to what is the effect of nonfiling of returns within the prescribed period and whether there was a lapse on the Petitioner in even curing the deficiencies which were pointed out by the deficiency memo etc., would be factual aspects, which would have to be appreciated by the Appellate Authority.
9. The impugned order is appealable order under Section 107 of the CGST Act. The difficulty that the Petitioner expresses is that since no reply was filed, there are no documents on record on behalf of the Petitioner.
10. Accordingly, the Petitioner is permitted to avail of the appellate remedy under Section 107 of the CGST Act.
11. In the appeal, the Petitioner may file any documents it is relying upon in order to support its case.
12. The appeal shall be filed along with the pre-deposit.
13. The Appellate Authority shall consider the matter on merits itself and not dismiss it on the ground of limitation. The appeal shall be filed within 45 days.
14. The petition is disposed of in these terms. Pending application(s), if any, also stand disposed of.