Section 16(5) non obstante clause overrides Section 16(4) timeline, rendering denial of Input Tax Credit unsustainable.

By | June 3, 2026

Section 16(5) non obstante clause overrides Section 16(4) timeline, rendering denial of Input Tax Credit unsustainable.

Issue

Whether the denial of Input Tax Credit (ITC) under Section 16(4) of the CGST/SGST Act is legally sustainable if the assessee filed the relevant returns within the cut-off period contemplated under the overriding non obstante provisions of Section 16(5).

Facts

  • The Claim: The petitioner, a registered taxpayer under the CGST/SGST Acts, claimed Input Tax Credit for the months of December 2021, January 2022, and February 2022.

  • The Denial: The Assessing Officer (AO) passed an assessment order under Section 73 denying the ITC on the grounds that the returns were not filed within the statutory timeline prescribed under Section 16(4).

  • Filing Discrepancy: The impugned order paradoxically recorded that the returns for the disputed months had been submitted on February 26, 2021, February 26, 2021, and March 1, 2021, which preceded the statutory cut-off.

  • Recovery Action: Following the denial of the ITC, the tax department issued subsequent recovery notices to the petitioner.

  • Assessee’s Defense: The petitioner contended that they were fully entitled to the credit under Section 16(5) since the filings were completed before November 30, 2021, and argued that the non obstante clause in Section 16(5) completely overrides the restrictions of Section 16(4).

Decision

  • Timely Submission Established: The Court observed that the returns had indeed been submitted well within the cut-off period contemplated under Section 16(5), a fact explicitly noted in the revenue’s own impugned order.

  • Overriding Effect of Section 16(5): It was held that since Section 16(5) carries a explicit non obstante clause (“notwithstanding anything contained…”) vis-à-vis Section 16(4), the restrictive timeline of Section 16(4) loses its significance once the returns are filed within the Section 16(5) window.

  • Denial Unsustainable: The Court ruled that the denial of ITC by invoking Section 16(4) in the Section 73 proceedings was legally unviable.

  • Orders Quashed: Consequently, the High Court quashed the defective assessment order as well as the subsequent recovery notices, ruling entirely in favor of the assessee.

Key Takeaways

  • The Power of Non Obstante Clauses: A non obstante clause in a newer or specific sub-section (like Section 16(5)) acts as a statutory override, completely neutralizing any conflicting timelines or restrictions found in the general provision (Section 16(4)).

  • Contradictory Orders Cannot Stand: Tax authorities cannot acknowledge in the body of their order that returns were filed before the ultimate cut-off date and simultaneously penalize the taxpayer for late filing under an overridden section.

  • Protection of Substantive ITC Rights: Once a taxpayer satisfies the relaxed statutory deadlines brought in by subsequent legislative amendments or specific overrides, their right to claim ITC becomes secure and cannot be dismantled by a restrictive interpretation of the original rules.

HIGH COURT OF KERALA
Vellaram Kunnumal Prabeesh
v.
Superintendent, Central Tax and Central Excise
ZIYAD RAHMAN A.A., J.
WP(C) NO. 17290 OF 2026
MAY  22, 2026
R.JaikrishnaKum. Narayani HarikrishnanC.S. Arun ShankarAnish P. and K. Suresh Chandran, Advs. for the Petitioner. V. Girish Kumar, SC for the Respondent.
JUDGMENT
1. The petitioner is a registered tax payer under the provisions of the CGST and SGST Act. This writ petition is submitted by the petitioner challenging Ext.P1 order passed under Section 73 of the CGST Act by which the input tax credit claimed by the petitioner pertaining to the months of December 2021, January 2022 and February 2022 were declined on the reason that the petitioner failed to submit the returns within the period stipulated in Section 16(4) of the CGST Act.
2. The case of the petitioner is that, he is entitled to get the benefit of input tax credit in the light of Section 16(5) of the CGST Act, as the petitioner had already submitted the return before the cut off date under the said provision, which is 30.11.2021.
3. After hearing the learned counsel for the petitioner and the learned Government Pleader, I find that there is some force in the said submission. This is particularly because, in the order impugned in this case itself, it is clearly mentioned that the returns for the months of December 2021, January 2022 and February 2022 were submitted by the petitioner on 26.02.2021, 26.02.2021 and 01.03.2021 respectively. Thus, it is evident that the returns were submitted within the cut off date contemplated under Section 16(5) of the Act and hence the petitioner is entitled to the benefit. This is particularly because, Section 16(5) there is a non-obstante clause, as regards Section 16(4) and therefore, once the tax payer submits the return within the cut off date contemplated under Section 16(5) of the Act, the time line in Section 16(4) loses its significance.
In such circumstances, this writ petition is disposed of quashing Ext.P1 order and Ext.P4 recovery notice with a direction to the 1st respondent to reconsider the matter and grant the benefits of Section 16(5) of the CGST Act, if he is otherwise entitled.
Category: GST